PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 102790
Common NameSELMODRAFT_128905
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family DBB
Protein Properties Length: 96aa    MW: 10339.9 Da    PI: 6.6333
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
102790genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.34.9e-06444438
  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
              + C+ +   ++ ++C+ +  ++C  C l+ H g       H+
    102790  4 KLCDGCRVSNAAIYCTADMAYICLGCDLKVH-GanklasrHE 44
              57*****888*********************.5466777776 PP

2zf-B_box29.61.4e-094590241
  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
              + ++C+ +e+ ++   C+ +   lC++C + +H+       H++v 
    102790 45 RVWICEVCEHAPAAVICKADAAALCASCDTDIHSAnplanrHERVA 90
              5789*****************************6688888898875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.4E-10148IPR000315B-box-type zinc finger
PROSITE profilePS501199.67148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.044491IPR000315B-box-type zinc finger
PfamPF006437.1E-84590IPR000315B-box-type zinc finger
CDDcd000216.02E-54779No hitNo description
SMARTSM003363.4E-84991IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
SMTKLCDGCR VSNAAIYCTA DMAYICLGCD LKVHGANKLA SRHERVWICE VCEHAPAAVI  60
CKADAAALCA SCDTDIHSAN PLANRHERVA VTPFFE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002975084.13e-65hypothetical protein SELMODRAFT_102790, partial
RefseqXP_002988974.18e-65hypothetical protein SELMODRAFT_128905, partial
SwissprotQ940T98e-45COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLD8RUZ53e-65D8RUZ5_SELML; Putative uncharacterized protein (Fragment)
TrEMBLD8T0148e-65D8T014_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ100032e-64(Selaginella moellendorffii)
STRINGEFJ238698e-65(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6911767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-45CONSTANS-like 4
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]